PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46491.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23883.5 Da    PI: 11.2371
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46491.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.5e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk+ye+ss
  KZV46491.1  9 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSPSGKVYEFSS 59
                79***********************************************96 PP
2K-box65.51.9e-2277162590
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                 +++++  +++e +++e++ L++ + +L+   +h+ Ge+L+ L +k+L+qLe+qL  +++++RskK +++ e+i++l+++  + +e+
  KZV46491.1  77 QTNDQGFTNMEVWKNEIDDLRRTVASLEARDKHIAGENLSGLGMKDLKQLERQLRIGVERVRSKKRRIVAEHISYLKRRRSSGREQ 162
                 5566777899*******************9************************************************98877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.095161IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-33281IPR002100Transcription factor, MADS-box
CDDcd002653.53E-39270No hitNo description
PRINTSPR004042.7E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1985162IPR002487Transcription factor, K-box
PROSITE profilePS5129710.75286169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSP SGKVYEFSSH  60
DIHRTIARYK SEVGITQTND QGFTNMEVWK NEIDDLRRTV ASLEARDKHI AGENLSGLGM  120
KDLKQLERQL RIGVERVRSK KRRIVAEHIS YLKRRRSSGR EQSSPKESGH PQLSRMSFKK  180
ETQAQAFITK QMRLEHAKGL NRRIRPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21169169MEF2 CHIMERA
6byy_B1e-21169169MEF2 CHIMERA
6byy_C1e-21169169MEF2 CHIMERA
6byy_D1e-21169169MEF2 CHIMERA
6bz1_A1e-21169169MEF2 CHIMERA
6bz1_B1e-21169169MEF2 CHIMERA
6bz1_C1e-21169169MEF2 CHIMERA
6bz1_D1e-21169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140155KRRIVAEHISYLKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073080.15e-93MADS-box transcription factor 23 isoform X1
RefseqXP_011073081.15e-93MADS-box transcription factor 23 isoform X2
SwissprotA0A217EJJ09e-49AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A2Z7CHG51e-150A0A2Z7CHG5_9LAMI; Uncharacterized protein
STRINGMigut.D01274.1.p8e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.12e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  2. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  3. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  4. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]