PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46474.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 767aa    MW: 85931 Da    PI: 6.7307
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46474.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1774169198
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+       ++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv +++L +gD         +++el+
  KZV46474.1  74 FCKILTASDTSTHGGFSVLRRHADEClppldmTKQPPI-QELVAKDLHGIEWRFRHIFRGQPRRHLLQSGWSMFVGSKRLIAGDA-------GENGELR 164
                 99****************************98555555.49*******************************************6.......2555566 PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 v+v+r
  KZV46474.1 165 VGVRR 169
                 66655 PP
2Auxin_resp115.93.5e-38195277183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+G Rfkm+fe+++++e+r++Gt+vg++d+d+ rWpnSkWr+Lk
  KZV46474.1 195 AWHATQTKTMFTVYYKPRTSPAEFIVPYDQYVNSVKNNYSAGLRFKMRFEGDEAPEQRFTGTIVGIEDSDSKRWPNSKWRCLK 277
                 79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-3370198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-3171184IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-1772169No hitNo description
PfamPF023621.7E-1574157IPR003340B3 DNA binding domain
SMARTSM010191.9E-1474171IPR003340B3 DNA binding domain
PfamPF065072.2E-35195277IPR010525Auxin response factor
PfamPF023096.5E-9636731IPR033389AUX/IAA domain
PROSITE profilePS5174524.928640733IPR000270PB1 domain
SuperFamilySSF542772.42E-9640717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
VEASTKQSED LQIPVYNLPP KILCRVVNVN LKAEPDTDEV FAQIILIPEP NQDENARKKE  60
TLPPPPPRFH VHSFCKILTA SDTSTHGGFS VLRRHADECL PPLDMTKQPP IQELVAKDLH  120
GIEWRFRHIF RGQPRRHLLQ SGWSMFVGSK RLIAGDAGEN GELRVGVRRA MKQQGNAPSS  180
VISSHNMHLG VLATAWHATQ TKTMFTVYYK PRTSPAEFIV PYDQYVNSVK NNYSAGLRFK  240
MRFEGDEAPE QRFTGTIVGI EDSDSKRWPN SKWRCLKVRW DEISAVPRPD RVSPWNIEPV  300
PPHAMNPLPV ARSKRPRPSA LPSSPDSPGL TRKGTPKMTV DPRPASGIPK VLQGQEISNS  360
RGTFLERNDS NMSENRLSWG PPLDEEKIDD VSTSRKYESD NWLSSGRTEM LFTDLLSGLE  420
SQIDSSDGFC MSSGEANLKH ITREQAAKFT LVGNAWSMVP SDMPLDVMDS GSKTRMQSCH  480
TSHQPHSEVR YDTLKGFSTS PCPMSDNQQA NWLMPPPTSP YVQILPDESQ NLMPKSICKQ  540
MPESLKSKEG NFKLFGIPLI SNSVPLKPAS LNTTMEPSGH ALEDINSYYS STTESDQRFD  600
KSKGSKPIFP AAVCESEKHF QTFHPVARER EDKVCSVSTR SCTKVHKQGM ALGRSIELAK  660
FNNYDELIAE LDNLFVFDGE LKARSKNWLV AYTDDEDDMM LVGDDPWEEF CGMAREILIL  720
TNEEVLRMNP RNFGVKGENT SSIAEGSDSK EAKYLQTTSS SNMAPAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-136130052355Auxin response factor 1
4ldw_A1e-136130052355Auxin response factor 1
4ldw_B1e-136130052355Auxin response factor 1
4ldx_A1e-135130052355Auxin response factor 1
4ldx_B1e-135130052355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46474.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073189.10.0auxin response factor 2-like
SwissprotQ2LAJ30.0ARF2A_SOLLC; Auxin response factor 2A
TrEMBLA0A2Z7CPC30.0A0A2Z7CPC3_9LAMI; Auxin response factor (Fragment)
STRINGMigut.I00613.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]
  3. Xu T, et al.
    SlARF2a plays a negative role in mediating axillary shoot formation.
    Sci Rep, 2016. 6: p. 33728
    [PMID:27645097]
  4. Ren Z,Liu R,Gu W,Dong X
    The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.
    Plant Sci., 2017. 256: p. 103-111
    [PMID:28167023]