PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV46416.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 340aa MW: 38586 Da PI: 8.3331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46416.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	9.9e-07	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F rk nL+ H r+H KZV46416.1 33 YVCEICEQGFQRKQNLEMHRRRH 55 9*********************9 PP
2	zf-C2H2	15.1	6.5e-05	109	130	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + s++k H+rt+ KZV46416.1 109 ICHRCSKAYAVLSDYKAHLRTC 130 7*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.63E-7	32	55	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-6	32	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.928	33	55	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0035	33	55	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	72	102	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.7E-6	99	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.63E-7	103	129	No hit	No description
SMART	SM00355	170	108	128	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.933	128	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MCEYLSIYEA LVTDPDAEVV SLSPKTLLES ERYVCEICEQ GFQRKQNLEM HRRRHKVPWK 60 LVQREARMDR VFVCPEETCL HHDPKHALGD LVGIKKHFRR KHSNNKPWIC HRCSKAYAVL 120 SDYKAHLRTC GTRGHSCHCG RVFSRVESFI EHQDSCTFSH HNQPPELKSP TQLEACTSSP 180 TASSSTTPSM EYADFSTVSV PTILPTIPGE RDDNYLNLEL QLLPLSTKLT REKQLNFAMA 240 ENGFAEEAIR QAKQQIELAE LEFSKAERIR KQALADLENA RVLKEKFTKK ISSTVFEVTC 300 HACKHKFQAL TGTTPPTVAE SSSVINSVSS AKLKAKKITD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-14	106	156	5	55	Zinc finger protein JACKDAW
5b3h_F	2e-14	106	156	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46416.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775158.1	1e-131	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Refseq	XP_016487511.1	1e-131	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-111	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2Z7CNQ1	0.0	A0A2Z7CNQ1_9LAMI; Zinc finger family protein
STRING	XP_009775158.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-105	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]