PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV46411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25552.4 Da PI: 6.8572 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H KZV46411.1 75 FSCNYCRRKFYSSQALGGHQNAH 97 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.02E-6 | 71 | 102 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRPPNLNLES EDESECTSQV GSNISVQETS PAHSKETNET RPLTLDLTLG FLNNTDADSK 60 GVDESPHPPA GTRVFSCNYC RRKFYSSQAL GGHQNAHKRE RTLAKRAMRM GMLSERYASL 120 ASLPLHGSAF QSLGIEAHSA MHQQIAGPIP RPIHGIKGGA RFVDQGYFGN MPAVFMEYDD 180 AEISTWPGSF RQIDGYHGNR GFHSGQSSNI SFVVPDPPPP RTDSSLPDLN LKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV46411.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022882244.1 | 1e-101 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 4e-39 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2Z7CH74 | 1e-174 | A0A2Z7CH74_9LAMI; Zinc finger protein 4-like | ||||
STRING | PGSC0003DMT400075898 | 3e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-41 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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