PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46288.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 327aa    MW: 36880.2 Da    PI: 7.3278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46288.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05170189120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  KZV46288.1 170 FSCPVCYKTFNRYNNMQMHM 189
                 89*****************9 PP
2zf-C2H215.35.8e-05254276123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  + + ++H +++
  KZV46288.1 254 FMCRKCGKTFAVRGDWRTHEKNC 276
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-5166192No hitNo description
PROSITE profilePS501579.743170197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45170192IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-4170189IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-6236274No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5250274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.725254274IPR007087Zinc finger, C2H2
SMARTSM0035535254274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTDPHSNLYP QSFKSNFFHH FAVPTPPDHN NAYLENNLSI SHQCYNQAPN SPPLKEALPL  60
LRLTPTSCEE QKPSCARRDD FDEDKRAENG KKRTLFAADE EEEEDGGGVT VALHIGLPNP  120
SASDLATVVS GNPADKDGEA DVSGYQISSI NKGQYWIPTP SQILIGPTQF SCPVCYKTFN  180
RYNNMQMHMW GHGSQYRRGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT  240
LQTHYKRKHG IKPFMCRKCG KTFAVRGDWR THEKNCGKLW YCLCGSDFKH KRSLKDHIRA  300
FGNGHGAYGV DGFEEEEPAS EIEQDDD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075201.11e-167zinc finger protein WIP2
SwissprotQ9SVY11e-138ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2Z7CH790.0A0A2Z7CH79_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g08070.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-140C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]