PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV45956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 23030.9 Da PI: 5.8994 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 8 | 63 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +R++f++eq++ Le++F ++ p + + LA+klgL+ rqV +WFqN+Ra+ k KZV45956.1 8 KNNRRRFSDEQIRSLETMFDAESRPELRLKMNLANKLGLQPRQVAIWFQNKRARSK 63 678***************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 105.8 | 3.3e-34 | 10 | 101 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+++LE++F++e++ e + K++la++Lglqprqva+WFqn+RAR k+k++E++y +Lk+++d+l+++ + L+ke+++L +l++ KZV45956.1 10 NRRRFSDEQIRSLETMFDAESRPELRLKMNLANKLGLQPRQVAIWFQNKRARSKSKHIETEYGVLKTKFDELSSQFDILRKENQALLIQLQR 101 68************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-17 | 5 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 5 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.107 | 5 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 7 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.89E-14 | 8 | 66 | No hit | No description |
Pfam | PF00046 | 8.9E-17 | 8 | 63 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 40 | 63 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.3E-13 | 65 | 105 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MSTIKRSKNN RRRFSDEQIR SLETMFDAES RPELRLKMNL ANKLGLQPRQ VAIWFQNKRA 60 RSKSKHIETE YGVLKTKFDE LSSQFDILRK ENQALLIQLQ RLKSMAGQKD DEIPDDYEDR 120 IKIASESPEA QREAHSNELF MPSCGDAGKR VDSMETEFLN MAQDSLTSPD TGCSFDSCTF 180 LDNPGYSSQW WDFKFCPPA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV45956.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842101.1 | 8e-68 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 2e-38 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2Z7CME4 | 1e-146 | A0A2Z7CME4_9LAMI; Homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | Migut.E00626.1.p | 3e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 6e-41 | homeobox 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|