PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV45902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 18847.4 Da PI: 9.366 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.3 | 4.9e-43 | 1 | 122 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +rF Pt+eel+ ++L+kk++++++e +i +v+ yk++Pw+L + + ++ewyfF++r+ ky++g+r+nra+ +gyWkat d+++ + ++e++g KZV45902.1 1 MRFAPTEEELI-CHLRKKIKNEPFED-VCICSVNFYKYNPWELTdMYPTLATDEWYFFTSREFKYPNGSRPNRAAGDGYWKATVADQKIQE-RQEVIGF 96 69*********.89*********888.67**************8444444677*************************************9.999**** PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+g+ap+g+kt+W+mhey+l KZV45902.1 97 KKTLVFYHGKAPNGKKTNWIMHEYTL 122 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-47 | 1 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-22 | 1 | 122 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.361 | 1 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MRFAPTEEEL ICHLRKKIKN EPFEDVCICS VNFYKYNPWE LTDMYPTLAT DEWYFFTSRE 60 FKYPNGSRPN RAAGDGYWKA TVADQKIQER QEVIGFKKTL VFYHGKAPNG KKTNWIMHEY 120 TLRQRSTRND ANNNMQSDNC VLCRIHERKR TAVIQHKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 1 | 152 | 21 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 1 | 152 | 21 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 1 | 152 | 21 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 1 | 152 | 21 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-44 | 1 | 152 | 21 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 1 | 152 | 21 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV45902.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157746.1 | 4e-49 | PREDICTED: NAC transcription factor 32-like | ||||
Swissprot | Q8H115 | 5e-47 | NA102_ARATH; NAC domain-containing protein 102 | ||||
TrEMBL | A0A2Z7CFV0 | 1e-117 | A0A2Z7CFV0_9LAMI; NAC domain-containing protein 2-like | ||||
STRING | PGSC0003DMT400023917 | 5e-48 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 2e-49 | NAC domain containing protein 102 |
Publications ? help Back to Top | |||
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