PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45673.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 287aa    MW: 33123.3 Da    PI: 9.5459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45673.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.8e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll ++v+++G + W++Ia++++ gR +kqc++rw+++l
       KZV45673.1 111 KGQWTSDEDRLLEKLVEKHGVRKWSSIAQMLP-GRIGKQCRERWHNHL 157
                      799*****************************.*************97 PP
2Myb_DNA-binding57.53e-18163205145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++rW+ eEd +l++a++q G++ W+ Iar ++ gR+++++k++w+
       KZV45673.1 163 KDRWSDEEDRILIEAHRQVGNR-WAEIARSLP-GRSENMIKNHWN 205
                      68********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.565106161IPR017930Myb domain
SuperFamilySSF466893.95E-31108204IPR009057Homeodomain-like
SMARTSM007171.1E-17110159IPR001005SANT/Myb domain
PfamPF002493.4E-18111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-28112164IPR009057Homeodomain-like
CDDcd001675.59E-16114157No hitNo description
PROSITE profilePS5129421.804162212IPR017930Myb domain
SMARTSM007171.5E-17162210IPR001005SANT/Myb domain
PfamPF002491.0E-15163205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-21165210IPR009057Homeodomain-like
CDDcd001674.02E-13165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDFDRENLVL YSKLFEETDD AVGLFSSSHY CSLQGRNLDP PPSLLHSPIF YDPFEASASG  60
NLLGNIHSSQ TVVENKSLQD NNAKRKTKKI KEPVQTRRRR RPIDSKPDIV KGQWTSDEDR  120
LLEKLVEKHG VRKWSSIAQM LPGRIGKQCR ERWHNHLKPD IKKDRWSDEE DRILIEAHRQ  180
VGNRWAEIAR SLPGRSENMI KNHWNATKRR QRKNNSSISP LQDYINNVIS SSTSSASMIS  240
PSKKSLVSEN NIINAGDPHD HQSFIGMQFD FDHKDMDFME MLSIGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-451072113107B-MYB
1h88_C5e-4510721154158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-4510721154158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391KRKTKKIKE
283100KRKTKKIKEPVQTRRRRR
384101RKTKKIKEPVQTRRRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850795.14e-69PREDICTED: myb-like protein AA
TrEMBLA0A2Z7CGA40.0A0A2Z7CGA4_9LAMI; Uncharacterized protein
STRINGMigut.H00097.1.p2e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-58myb domain protein 98