PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45637.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 516aa    MW: 55776.1 Da    PI: 7.6843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45637.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-31242298259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk se+prsYY+Ct+++Cpvkkkver   d++v eitY+g+Hnh+
  KZV45637.1 242 SDGYNWRKYGQKHVKASECPRSYYKCTHPNCPVKKKVERGV-DGHVSEITYKGQHNHD 298
                 7****************************************.***************7 PP
2WRKY1048.2e-33401459159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg+++prsYYrCt++gC v+k+ver++ dpk+v++tYeg+Hnh+
  KZV45637.1 401 LDDGFKWRKYGQKVVKGNPHPRSYYRCTYSGCDVRKHVERASADPKCVITTYEGKHNHD 459
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.204236300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-27236300IPR003657WRKY domain
SuperFamilySSF1182901.26E-24239300IPR003657WRKY domain
SMARTSM007741.1E-33241299IPR003657WRKY domain
PfamPF031062.7E-23243298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-36387461IPR003657WRKY domain
SuperFamilySSF1182903.53E-29393461IPR003657WRKY domain
PROSITE profilePS5081137396461IPR003657WRKY domain
SMARTSM007741.4E-38401460IPR003657WRKY domain
PfamPF031064.8E-26402459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGETIEDVAA VSKSKPTISV PPRGSMDALF INWSGLGFSP GPMTLLSSYL GDQGSFSFSQ  60
LLAGAMASPI VGKPGFLSSQ DSGKEVREGS LANDEKTSDN GAGYKRNRPM NLVVAQSSEP  120
QSLSPLFMFP PGLSPSGLLN SPGFLSPLNS PFGMSHQQAL AHVTAQAALS QSYMQMQEEF  180
HRSSSTATTE ALEHRSPSAP KESSVQQTNA LPAVAESSKA ETSDVSLCDK RAASVAGDKP  240
ASDGYNWRKY GQKHVKASEC PRSYYKCTHP NCPVKKKVER GVDGHVSEIT YKGQHNHDPP  300
HPNKRGLDSS GLERSVNPQS KPPFSEAVSV PATTQQSFDH LPVTRHNQET KDAAVVLDGD  360
DDEPNAKRRN VDIGSSMPGS SQQTVTDSKI VVQTRSEVDL LDDGFKWRKY GQKVVKGNPH  420
PRSYYRCTYS GCDVRKHVER ASADPKCVIT TYEGKHNHDI PAGKYSSHGS GGTSSHQFKA  480
QKMVAENITS SKEIDFGTID QIPITLQLKE EQIVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37243462878Probable WRKY transcription factor 4
2lex_A3e-37243462878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45637.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098678.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-132WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2Z7CIA10.0A0A2Z7CIA1_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-134WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]