PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45619.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 357aa    MW: 39491.7 Da    PI: 9.4076
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45619.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.91.5e-33541893126
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasnsssgk 89 
                 g+kdrhsk++T++g+RdRRvRls+++a++++dLq++LG+ ++sk+++WLl++ak +i+el+ +        ss+s++ +     a+s+s++++   ++ 
  KZV45619.1  54 GGKDRHSKVCTAKGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKAVDWLLNAAKNEIDELPPLqipyglsfSSQSSRTSflefGAASQSEKSQGLMING 152
                 78*************************************************************999999773333322245443334444444344445 PP

         TCP  90 aaksaakskksqksaasalnlakesrakarararert 126
                 +a+ + k+++s+    ++ +++ e+r +    +r+++
  KZV45619.1 153 SAAGSLKHQRSNPLLGKTMEVSGETRGRDENWSRNED 189
                 5666656666666666666666666644433333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.02655113IPR017887Transcription factor TCP subgroup
PfamPF036344.5E-3155190IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIQREQEFTA LIQEISSKTT QEGKVSKLGS SSTSATSWSR LKDPRIVQVS RVFGGKDRHS  60
KVCTAKGLRD RRVRLSVPTA IQLYDLQERL GLNQPSKAVD WLLNAAKNEI DELPPLQIPY  120
GLSFSSQSSR TSFLEFGAAS QSEKSQGLMI NGSAAGSLKH QRSNPLLGKT MEVSGETRGR  180
DENWSRNEDE NQYASANIRL ASRQNPTSFS SLLSSISPHN PFLRPDPSNL TLSQPTQCHG  240
LRPVLANDED LHNFSHLPMS STMSFASGSQ VLVYQPGTAT QSHFSSQIAA INTEFDPKQL  300
NYQTLQLSTS SRSSPINSSS AHSVRPFHFS MTTNLLASQN NEANEQNNNR DHFHDSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1960114155Putative transcription factor PCF6
5zkt_B4e-1960114155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099021.11e-103transcription factor TCP5-like
RefseqXP_011099023.11e-103transcription factor TCP5-like
TrEMBLA0A2Z7CLP80.0A0A2Z7CLP8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-43plastid transcription factor 1