PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45611.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 430aa    MW: 48875.4 Da    PI: 6.9985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45611.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.53.1e-101374201373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++ ssg+l+ a+a+L ++s las +gd+mqRlaa f+ ALa rl++ +++lyk+l+  +       +   a+++f  ++P++++ + ++N
  KZV45611.1  37 LIQLLLTCANHASSGNLHHADACLRQISRLASINGDSMQRLAARFASALAVRLVKRWPGLYKSLNNGTGL--ALCDIDRAREIFERTFPCMELVYAVTN 133
                 689*************************************************************887776..48888889******************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +++++a++ge+ +H i ++ + +  W+++l+ L + +    +gpp+l+iT +g+    ++e+ e++g  Lak Ae l++pf+f++ v  ++ dl++++L
  KZV45611.1 134 RTLVQAMSGERVIHAIYLGSGSPKLWVPFLRGLQEGSkefdHGPPHLKITCIGK----DREAQERLGAVLAKEAEILHMPFQFDP-VIVDIRDLRIDML 227
                 *********************************9665558899***********....9**************************.6888********* PP

        GRAS 195 rvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                 +++pgEala  ++l+lh ll              +++++ +++ +e+L++vks+sPkvv +veqe++hns+++++rf++ l++ysa+fds+++ ++  s
  KZV45611.1 228 NLQPGEALALISMLSLHVLLteddrveshfglrkNDQMKDAKRLNEFLEMVKSMSPKVVLLVEQESNHNSNRLVDRFVNGLHFYSAIFDSIDVAFGGLS 326
                 ********************************99888888889******************************************************** PP

        GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++r+++E++ +g+ei+n+v+ceg+er+erhe++ +W  r+ + GF+p++l ++++++a ++++ ++  + ++v + +g+l+++W+drp++ vSaW
  KZV45611.1 327 cQDRTMMEEM-FGKEIENIVSCEGREREERHERFDQWAVRFVNLGFSPIRLWSDIMDDALRVVEDYGpCW-FKVINVKGCLMICWHDRPIYCVSAW 420
                 9999999999.********************************************************666.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.0711401IPR005202Transcription factor GRAS
PfamPF035141.1E-9837420IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSSSLPPKKP DVNLSLGLPN LHTCSGRLKP EERDVKLIQL LLTCANHASS GNLHHADACL  60
RQISRLASIN GDSMQRLAAR FASALAVRLV KRWPGLYKSL NNGTGLALCD IDRAREIFER  120
TFPCMELVYA VTNRTLVQAM SGERVIHAIY LGSGSPKLWV PFLRGLQEGS KEFDHGPPHL  180
KITCIGKDRE AQERLGAVLA KEAEILHMPF QFDPVIVDIR DLRIDMLNLQ PGEALALISM  240
LSLHVLLTED DRVESHFGLR KNDQMKDAKR LNEFLEMVKS MSPKVVLLVE QESNHNSNRL  300
VDRFVNGLHF YSAIFDSIDV AFGGLSCQDR TMMEEMFGKE IENIVSCEGR EREERHERFD  360
QWAVRFVNLG FSPIRLWSDI MDDALRVVED YGPCWFKVIN VKGCLMICWH DRPIYCVSAW  420
NCFRLPTNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-38274218378Protein SCARECROW
5b3h_D8e-38274218378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554883.10.0scarecrow-like protein 3
RefseqXP_020554884.10.0scarecrow-like protein 3
RefseqXP_020554885.10.0scarecrow-like protein 3
RefseqXP_020554886.10.0scarecrow-like protein 3
TrEMBLA0A2Z7CEY00.0A0A2Z7CEY0_9LAMI; GRAS family transcription factor
STRINGcassava4.1_030344m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-93scarecrow-like 3