PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45582.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 367aa    MW: 41447.6 Da    PI: 5.1972
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45582.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.2e-07952340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 r C+ ++e ++ l+C+ ++  lC +C  e H+       H+++
  KZV45582.1  9 VRLCDFCNESKALLYCRADSAKLCLNCDREVHSTnqlfskHSRC 52
                578******99*********************667788888776 PP
2zf-B_box23.11.6e-075493540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40
                 C+ +++ ++++fC + ++ lC++C  e+Hk     H+++
  KZV45582.1 54 LCDSCDSSPASIFCCSESVVLCQNCDWETHKEvrsiHDRR 93
                6*****************************8888888865 PP
3CCT63.66.1e-22323365143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R+ a++RYkeKrktR+++K+irYesRK++Ae R RvKGrF+k 
  KZV45582.1 323 RDSAISRYKEKRKTRRYDKQIRYESRKVRAEGRTRVKGRFAKM 365
                 899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-13754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438754IPR000315B-box-type zinc finger
PfamPF006431.0E-5952IPR000315B-box-type zinc finger
CDDcd000212.47E-81054No hitNo description
PROSITE profilePS501199.6845095IPR000315B-box-type zinc finger
CDDcd000211.87E-65495No hitNo description
SMARTSM003360.165595IPR000315B-box-type zinc finger
PROSITE profilePS5101714.892323365IPR010402CCT domain
PfamPF062032.8E-16323365IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTSVADYEVR LCDFCNESKA LLYCRADSAK LCLNCDREVH STNQLFSKHS RCLLCDSCDS  60
SPASIFCCSE SVVLCQNCDW ETHKEVRSIH DRRLLEGFNG CPTVSELLNF LGFDDLEKKS  120
LVLGDGGNDD GWSDLLVWET PSIVSIDDLI VSNDSSDSGR SFQAMGVPPL PKNRNVTCGK  180
YKEEILCQLR EMAKTEPNYS SCLEYVDSHV EFIRQAPEKF QLMDNYNSPC MDNNTAPTVV  240
PSYETSAHER CDSGVIRDQV FHTPVLNNLI EINHLVPDKD SDCGDNLGSA SSCLEMQSQV  300
LADPKVIQVI SAGGMRELNT QERDSAISRY KEKRKTRRYD KQIRYESRKV RAEGRTRVKG  360
RFAKMDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.11e-174zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2Z7CEX70.0A0A2Z7CEX7_9LAMI; Zinc finger protein CONSTANS-LIKE 13-like
STRINGMigut.D00173.1.p1e-151(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.16e-86B-box type zinc finger protein with CCT domain