PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV45489.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 26114.4 Da PI: 10.5108 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 32 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v+ +G+ +W++Ia+++ gR++k+c++rw++ KZV45489.1 32 RGHWKSSEDTKLRELVATYGPQNWNLIAEELK-GRSGKSCRLRWHNQ 77 899****************************9.************96 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 84 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++++eE+ +l a +q+G++ W++I+r ++ gRt++ +k++w+ + KZV45489.1 84 KGAFSEEEEGRLMAAQTQYGNK-WALISRLFP-GRTDNAVKNHWHVL 128 799*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.776 | 27 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-14 | 31 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.69E-28 | 32 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-26 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.67E-11 | 35 | 76 | No hit | No description |
Pfam | PF13921 | 5.1E-17 | 35 | 95 | No hit | No description |
PROSITE profile | PS51294 | 24.467 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-12 | 83 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.91E-7 | 86 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 86 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGACGEKSKR NGKNSDRNRE KFKFKQSKLC SRGHWKSSED TKLRELVATY GPQNWNLIAE 60 ELKGRSGKSC RLRWHNQLDP KINKGAFSEE EEGRLMAAQT QYGNKWALIS RLFPGRTDNA 120 VKNHWHVLMA RRYKELSKSY MELGKWNSQP TNSYNRSRFN TDNQNSLTSG WERRRWLMKR 180 EKLFKDPIIN YDLSFAEGSS GGESYVDQNS SKKPTFIDFL GVGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-32 | 29 | 132 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-32 | 29 | 132 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV45489.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098643.2 | 3e-65 | myb-related protein A-like isoform X2 | ||||
Swissprot | Q5NBM8 | 3e-61 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2Z7CLB3 | 1e-166 | A0A2Z7CLB3_9LAMI; Myb-like protein AA | ||||
STRING | XP_004172495.1 | 1e-65 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-63 | myb domain protein 105 |