PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45354.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 285aa    MW: 32235.4 Da    PI: 8.4489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45354.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.54.8e-322106199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  KZV45354.1   2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGmGElGKDRLF 100
                 89***************************966778999*************************************************665999999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++r+
  KZV45354.1 101 IDWRRR 106
                 999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-401108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-26189No hitNo description
SuperFamilySSF1019364.71E-291105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-212107IPR003340B3 DNA binding domain
PfamPF023621.3E-292106IPR003340B3 DNA binding domain
PROSITE profilePS5086314.6492107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG MGELGKDRLF IDWRRRPDAP EFPTPIPTLP  120
IAHEFSFHRS IHPWNPLFMQ PPPTREYSHF LQANASNQYQ HHYGQSGQSP YSYNTTVVNG  180
NPCPPGSILR GGVEHMVFES VPVVQGKAAA KRLRLFGVNM DCPVSDSDDC DMLSHSTVPL  240
EQLTHPPAVD SSSSSSPPIP SLLQLRPYNQ NNDKGKGSMS LDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-6411077114B3 domain-containing transcription factor NGA1
5os9_B7e-6411077114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547752.11e-142B3 domain-containing transcription factor NGA1-like
SwissprotQ8LMR96e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2Z7CL910.0A0A2Z7CL91_9LAMI; Uncharacterized protein
STRINGGorai.008G261100.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-75B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]