PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44807.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 325aa    MW: 36670.9 Da    PI: 5.2869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44807.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-20124173255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g
  KZV44807.1 124 KFRGVRQRP-WGKWAAEIRDPS----RkVRLWLGTYDTAEEAAMVYDNAAIKLRG 173
                 89*******.**********84....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30123181IPR001471AP2/ERF domain
PfamPF008474.4E-13124173IPR001471AP2/ERF domain
SMARTSM003801.0E-38124187IPR001471AP2/ERF domain
CDDcd000187.12E-34124180No hitNo description
PROSITE profilePS5103223.92124181IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22124181IPR016177DNA-binding domain
PRINTSPR003673.4E-10125136IPR001471AP2/ERF domain
PRINTSPR003673.4E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDQHLLWPLK HTEHTKITKK FVKPPARQKT GKQINVEAGT KLLEKPTTVR ISVTDPDATD  60
SSDDEVELCR RKRVKTYVTE IRMVPEVESN CANGRNKSVQ IAQLKPKPMK AKEVPAVADG  120
GVRKFRGVRQ RPWGKWAAEI RDPSRKVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF  180
STPAPEIEQA PSVSGCHSVD DSKILSSPTS VLRCRSSWTE DNETHNSMDS QDDSIRHSKQ  240
APTDYWDDGL LAMECSSLED FFHLETHDQD HSLYDKSQDF LNDLMALDKV HEANFGGLND  300
SFQDFNSLDV DDYFQDLSDF AILAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20123180462ATERF1
3gcc_A1e-20123180462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076033.15e-94ethylene-responsive transcription factor CRF4-like
RefseqXP_022887053.13e-94ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2Z7CG010.0A0A2Z7CG01_9LAMI; Uncharacterized protein
STRINGMigut.F00247.1.p2e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-58cytokinin response factor 4