PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44782.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 362aa    MW: 40252.7 Da    PI: 8.1998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44782.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12290335655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  KZV44782.1 290 SIAERLRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKNLQ 335
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15287346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-12288337No hitNo description
Gene3DG3DSA:4.10.280.108.8E-14289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESDTNSNYS EYRQQYSSSN SSQISSGLLK YRSAPSFLLE SYTNSGVLEK GTGRLSSRFC  60
FVDENGRMND ICNSNRSCGL GSQLPPQYST QNVGQLGSLA MDSMGMEHQV PGKMGPNIWR  120
QNSTPTGFFS NLSHQHGYGS IRSGPGSCYK ISDCGDDNGD SSPCSSRLKN RNIFFPGALS  180
RISEVENGPD DAKAGNGSDH DNVFGYPFGS WNSSNFAENF STGIKRELDD DPHELFGNTP  240
NGEPENRSNA LSRHLSLPKT SSEMEKLLQL QDMVPCKLRA KRGCATHPRS IAERLRRTRI  300
SERMRKLQEL VPNMDKQTNT ADMLDLAVEY IKNLQKQYKT LCENRANCKC SASQKMVLNQ  360
RP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075183.11e-118transcription factor bHLH130-like
TrEMBLA0A2Z7CCN00.0A0A2Z7CCN0_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000210629e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-80bHLH family protein