PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44716.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 358aa    MW: 39700 Da    PI: 7.6469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44716.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.2e-1692137147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
       KZV44716.1  92 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 137
                      899*****************************.***********996 PP
2Myb_DNA-binding55.21.6e-17144188147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+++l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
       KZV44716.1 144 RRAFTEEEEDRLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 188
                      678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.33387138IPR017930Myb domain
SuperFamilySSF466895.24E-2891185IPR009057Homeodomain-like
SMARTSM007173.3E-1491140IPR001005SANT/Myb domain
PfamPF002495.7E-1692137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2593145IPR009057Homeodomain-like
CDDcd001678.57E-1395136No hitNo description
PROSITE profilePS5129427.675139193IPR017930Myb domain
SMARTSM007173.1E-14143191IPR001005SANT/Myb domain
PfamPF002493.4E-14144187IPR001005SANT/Myb domain
CDDcd001676.79E-11146189No hitNo description
Gene3DG3DSA:1.10.10.601.7E-20146192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDTSDGIIYP SKGTNDSPIH SRSCSSSSGK SGSPMVGMAF SEMGSLSISQ NYDSLDLNAS  60
LVHEEDQESN MHALSSCKDS NEHTGQSKHC ARGHWRPAED TKLKELVALY GPQNWNLIAE  120
KLEGRSGKSC RLRWFNQLDP RINRRAFTEE EEDRLMAAHR LYGNKWAMIA RLFPGRTDNA  180
VKNHWHVVMA RKCREQSSAY RRRKMGQFVF WKVEDCDDLS LINGGSAASM KAEPSIPTYG  240
YGRSVGSSHS AVGGGDGGGN PRCNGYNWAA AAETAHGFFP AGHGTNEMMK MNIFNTSRSW  300
NETNPYHHHT QLFTAIQRTS YNSSTDSFRP SSQEISAVES AEERIAPKFI DFLGVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32921927107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.11e-128transcriptional activator Myb
TrEMBLA0A2Z7CIW20.0A0A2Z7CIW2_9LAMI; Myb-like protein Q
STRINGSolyc05g007870.1.17e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-77myb domain protein 105