PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV44617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23872.4 Da PI: 4.8632 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 4.1e-42 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++C+lapyfp +qp kf ++h++FGasn++kll++lpe +r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ ela++++ KZV44617.1 54 PCAACKILRRRCVENCILAPYFPPDQPLKFTIAHRVFGASNIIKLLRDLPEAQRADAVTSMVYEANARLRDPVYGCAGSICQLQKQISELQGELAKAQA 152 7***********************************************************************************************998 PP DUF260 100 e 100 e KZV44617.1 153 E 153 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.417 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-42 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEYTENTTSP TAAVVPVAVA ATEGYPSSLS PTPSPLSPVA AAASPPPTHV ILSPCAACKI 60 LRRRCVENCI LAPYFPPDQP LKFTIAHRVF GASNIIKLLR DLPEAQRADA VTSMVYEANA 120 RLRDPVYGCA GSICQLQKQI SELQGELAKA QAEIMNMQCQ NAKLFEMICK KMGTQDDLDQ 180 ETKHFTHELM FPYDDISNSP FFLDENILGV AWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 53 | 159 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 53 | 159 | 10 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV44617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834486.1 | 6e-85 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7CFH2 | 1e-161 | A0A2Z7CFH2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F02029.1.p | 2e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-68 | LOB domain-containing protein 1 |