PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV44526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 19250.8 Da PI: 8.2246 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + + ++H +++ KZV44526.1 69 FRCRKCAKPFAVRGDWRTHEKNC 91 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.8E-5 | 55 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 55 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MHMWGHGSEF RKGPESLRGT KPASPFPRMP CYCCAEGCKN NIDHPRSKPL KDFRTLQTHY 60 KRKHGTKPFR CRKCAKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRAFGEGH 120 AAHSKNLYPY DQVDVEEFEE EEEEDEHGEE FRIFECIGNG GFGGLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV44526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077223.1 | 3e-88 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-78 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A2Z7B8E0 | 1e-121 | A0A2Z7B8E0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01093.1.p | 2e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 2e-80 | C2H2-like zinc finger protein |