PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV44455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 513aa MW: 56682.5 Da PI: 4.8104 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 1e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lvd+v+++G g+W++I ++ g+ R++k+c++rw ++l KZV44455.1 35 KGPWTTAEDSILVDYVTKHGEGNWNAIQKHTGLARCGKSCRLRWANHL 82 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++ KZV44455.1 88 KGAFTLEEENLIIELHAKMGNK-WAKMAAELP-GRTDNEIKNYWNT 131 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.479 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-30 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.434 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.44E-12 | 90 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MTSDSEDMMP MNGEDSPLED AIDGGNVSGN VSLKKGPWTT AEDSILVDYV TKHGEGNWNA 60 IQKHTGLARC GKSCRLRWAN HLRPDLKKGA FTLEEENLII ELHAKMGNKW AKMAAELPGR 120 TDNEIKNYWN TRVKRRQRAG LPIYPPDLHV QSFNENQPDD DSNSFSSMEA PHFDLLPYNN 180 LEIPEFKGFD LNQQFYSGDS KLAGDPYLTY PNESCFPSSH SPKHPERPEY FYHGSNPVVS 240 NVTPDFSQHH YDGYLPTAHS FQFSPAYDYS SNYYNGSSSS AFPGSHVILN GKPSSSEPAW 300 AMKLELPSLQ TEMGSWGSPS TPLPYLESVD TLIQTPPNEL CTPACSLSPG NSGLLDAVLY 360 ESQIMKISNT NSHQQTSLAS GLDDDIVDTS SQDPQTGWEP YVEPVSPLGH SSPAMFTEST 420 PSNGNSSQFI EVTPDNKPLD FLKAGFLTCY KMLLVLIKYH VKIIPCLKHA TGMLLINDPS 480 ALGVLRMECK VLSCLLTVFL LAVVSDIEIL GNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-32 | 30 | 136 | 22 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV44455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022887698.1 | 1e-161 | transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_022887699.1 | 1e-161 | transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_022887700.1 | 1e-161 | transcription factor GAMYB-like isoform X2 | ||||
TrEMBL | A0A2Z7CCP5 | 0.0 | A0A2Z7CCP5_9LAMI; Transcription factor GAMYB-like | ||||
STRING | XP_009596031.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 3e-80 | myb domain protein 65 |