PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44152.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 501aa    MW: 55850.1 Da    PI: 8.4221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44152.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEd++l +++   G g+Wk+ +r  g+ R++k+c++rw +yl
       KZV44152.1 14 RGRWTEEEDQKLRNYILANGEGSWKSLPRNAGLLRCGKSCRLRWVNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.72e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eEde+++++++ +G++ W+ Ia  ++ gRt++++k++w+++l
       KZV44152.1  67 RGKFSAEEDEIIINLHASMGNK-WSVIAGVLP-GRTDNEIKNYWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.122961IPR017930Myb domain
SuperFamilySSF466891.37E-2711108IPR009057Homeodomain-like
SMARTSM007174.7E-111363IPR001005SANT/Myb domain
PfamPF002496.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-211568IPR009057Homeodomain-like
CDDcd001671.28E-81661No hitNo description
PROSITE profilePS5129423.35162116IPR017930Myb domain
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2569115IPR009057Homeodomain-like
CDDcd001672.97E-1169112No hitNo description
SuperFamilySSF549283.97E-6232323IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.0E-4254323IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGRSPCCEKV GLRRGRWTEE EDQKLRNYIL ANGEGSWKSL PRNAGLLRCG KSCRLRWVNY  60
LRSDLKRGKF SAEEDEIIIN LHASMGNKWS VIAGVLPGRT DNEIKNYWNS HLGKKNRQLP  120
ETQHQLRRPA AKASVWKIIR TSSSSSSVVA LSGHHHSQII CSSSTAAHSS VIEDDFIPEL  180
GPETSDCSSK QIRLVTEKHD YFLKLDTYRK GLAGGSSSSG NRPKCKEAMS TPSRASPTSR  240
PRPGENGDIS VSSNDSSEIS NMEENSRSIA IKNIYSTVGL YEIVEAISVF GKVTGALFVN  300
AFDGLKCCQI RFESLDSSRR AISVGKITVG SQEYPVHPLE SLDSSRRAIS AGKITVGSEE  360
YPVHPLDVVD VLAFRIKNIS QKTSDHDIHH MCKSLGELVG LARTSKESVD AFFNVRNKKI  420
HLNILQRLNS TVIDDCGWSA DLLRRNTLDE DSRCKLESQI SDQMNEMRRQ VMMDKINLED  480
LETLLFSILH IQEQASLSDA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23121155107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CAX90.0A0A2Z7CAX9_9LAMI; MYB-like DNA-binding domain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-62myb domain protein 12