PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44088.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 359aa    MW: 39473.1 Da    PI: 9.4707
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44088.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40170247178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqve+C+ dls akeyhr+h+vC  hsk+p+v+v g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  KZV44088.1 170 RCQVEDCNLDLSMAKEYHRKHRVCASHSKCPKVIVGGVERRFCQQCSRFHDLSEFDEKKRSCRRRLSDHNARRRKPQQ 247
                 6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-32163232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.941168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-37169250IPR004333Transcription factor, SBP-box
PfamPF031101.4E-30171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEWNFKWDWG NFGGFGWKAN ESPKRLHVAD WMIVDDGEIN GGSFNLSGGC GGSGASGSDS  60
EHGSSAKSSI SASVDSSTKD GMQTPNFRFM SSGNFGKKTD MHGTEISGTS PPLNALVEPL  120
IGLKLGKRTY FENSGNGANT KATSFSVMPA SSSSTPKKIK SSGQSTPTAR CQVEDCNLDL  180
SMAKEYHRKH RVCASHSKCP KVIVGGVERR FCQQCSRFHD LSEFDEKKRS CRRRLSDHNA  240
RRRKPQQETI QFNSARLSSQ FYGGRQQVSF LPNNTPILHS RTTADSTWDP NFTITKGYSL  300
KFNGYGATDE QLLVSVPSIN FSMHGNTASF LASKNSASEI LISGWFPTLC GLEFFFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-271712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086806.11e-149squamosa promoter-binding-like protein 12
RefseqXP_011086808.11e-149squamosa promoter-binding-like protein 12
RefseqXP_011086813.11e-149squamosa promoter-binding-like protein 12
RefseqXP_020551644.11e-149squamosa promoter-binding-like protein 12
TrEMBLA0A2Z7CB330.0A0A2Z7CB33_9LAMI; Squamosa promoter-binding-like protein 12-like
STRINGMigut.E00014.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-53squamosa promoter binding protein-like 2