PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV43660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GATA | ||||||||
Protein Properties | Length: 75aa MW: 8329.84 Da PI: 11.4415 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64 | 1.7e-20 | 5 | 39 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+ttkTplWR+gp+g+k+LCnaCG++ rkk++ KZV43660.1 5 CSDCKTTKTPLWRSGPSGPKSLCNACGIRRRKKRQ 39 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-13 | 1 | 50 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.69 | 1 | 35 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-14 | 2 | 47 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-16 | 3 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.09E-12 | 5 | 54 | No hit | No description |
Pfam | PF00320 | 6.7E-18 | 5 | 39 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 5 | 30 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MNKYCSDCKT TKTPLWRSGP SGPKSLCNAC GIRRRKKRQS PMKNKAKGRS RGRQWGEVER 60 AALLLMALSC GAVFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 37 | RRRKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV43660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837670.1 | 1e-27 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 2e-19 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A4D9BH54 | 3e-27 | A0A4D9BH54_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00988.1.p | 4e-27 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 8e-22 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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