PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43492.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 363aa    MW: 40379.2 Da    PI: 8.9969
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43492.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.3e-40139216178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC + l++ak+yhrrhkvCe+h+kap+v+v g+eqrfCqqCsrfh++++fDe+krsCrrrLa+hnerrrk+++
  KZV43492.1 139 RCQVEGCGTVLASAKDYHRRHKVCEKHAKAPKVVVLGIEQRFCQQCSRFHNVEQFDESKRSCRRRLAGHNERRRKSSQ 216
                 6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-33137201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.171137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-37138218IPR004333Transcription factor, SBP-box
PfamPF031102.4E-32140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDYYWSLLNN NTCHGDGVAE HGGNSSLWES WDLGGNFHAP PTSSCREVEP GAFHALMMRQ  60
EEKEGGQELH RRWFSSSSLY SGKGPCYYKP DPHLTCLKLG KRQYLPRSSA CPSYTGNKGK  120
FLKPSRGEPS APDVAVAPRC QVEGCGTVLA SAKDYHRRHK VCEKHAKAPK VVVLGIEQRF  180
CQQCSRFHNV EQFDESKRSC RRRLAGHNER RRKSSQEHSL AKRSVQGMKM MAASRNPNHF  240
SNSSECALSL LSSSTNQNPC VWNAISASTD LPARCSAALR ELIAENRAST LAIGRNNILD  300
SNNQTENLWI DQNGSSLRFT GTPSQQTGAQ LTLDLMRASS SECGMFSNHA FDHNGLKKLH  360
SIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301402131184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090056.11e-102squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A2Z7C9R90.0A0A2Z7C9R9_9LAMI; Squamosa promoter-binding-like protein 10
STRINGGorai.007G087900.15e-65(Gossypium raimondii)
STRINGEOX963626e-65(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-34squamosa promoter binding protein-like 10