PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43472.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 333aa    MW: 37462.2 Da    PI: 4.644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43472.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1997146255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++a +++++g
  KZV43472.1  97 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAAQAYDAEARRIRG 146
                 69*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.82897154IPR001471AP2/ERF domain
SMARTSM003802.8E-3997160IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2297155IPR016177DNA-binding domain
CDDcd000182.81E-3397156No hitNo description
Gene3DG3DSA:3.30.730.101.7E-3297155IPR001471AP2/ERF domain
PRINTSPR003671.9E-1198109IPR001471AP2/ERF domain
PfamPF008471.5E-1198146IPR001471AP2/ERF domain
PRINTSPR003671.9E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAILSDI LQPVRASRRL TVTPDMLWGR GAADLYQNKY RSNPVRSWSI ADFDHDLEAE  60
YKDYSDHHEE EFDVQKKSAS KFDDDAEKSS NRKRKNQYRG IRQRPWGKWA AEIRDPSKGV  120
RVWLGTFNTA EEAAQAYDAE ARRIRGKKAK LNFPEDAPAS ASRKTLEINY GKVSPKECSD  180
LVHANTNQNF IKSNDYSDSL DLPEHNPQMM QGSNSFDSFD PFGCSDFGWG ENHGETPEIS  240
SILSAVVADD LSLLMEDANP VKKVECTSHD LPSSNGRNLS NKIPEDASDF DYQMKLSQMP  300
YDNDSNWDSS IDAFLEGAFW TLDDISPSMM GGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2297154260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548105.11e-119ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLA0A2Z7C9P50.0A0A2Z7C9P5_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-47related to AP2 12