PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV43471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 15633.3 Da PI: 9.4428 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.2 | 2.4e-14 | 13 | 61 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G +++ +g+W+AeIrdp++ r++l +f t eeAa+a++a +++ +g KZV43471.1 13 YRGSQQCP-WGKWAAEIRDPRK---GIRVWLRTFNTDEEAAQAYDAEARRVRG 61 77778899.**********954...3**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-19 | 12 | 69 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-26 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-26 | 12 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.758 | 12 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-25 | 12 | 69 | No hit | No description |
Pfam | PF00847 | 2.0E-7 | 13 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
SEMSSNRKRK NQYRGSQQCP WGKWAAEIRD PRKGIRVWLR TFNTDEEAAQ AYDAEARRVR 60 GKKAKLNFPG DAPASASRKT LEINYGKVSP KECSDLVHAN TNQNFINSND YSDSLDLPEH 120 NPQMMQGSNS FDSLFVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 12 | 69 | 5 | 63 | ATERF1 |
3gcc_A | 1e-18 | 12 | 69 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV43471.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079396.1 | 4e-48 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_011079401.1 | 4e-48 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q6K7E6 | 9e-33 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2Z7CCM0 | 5e-99 | A0A2Z7CCM0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.I01124.1.p | 2e-44 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-24 | ethylene-responsive element binding protein |