PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43145.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31011.3 Da    PI: 9.6808
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43145.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-312574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  KZV43145.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                79***********************************************8 PP
2K-box102.84.6e-34941895100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++s++ea+++ +qqe+akL+++i+++q+++R++lGe+++s+slkeL++ e ++ek++++iRskKnell+++ie +qk+e el+++n++Lr+k++e
  KZV43145.1  94 NSVSTSEANTQFYQQEAAKLRRQIREIQTSNRQILGEGVSSMSLKELKNTEGKVEKAISRIRSKKNELLFAEIELMQKRELELHNANMYLRAKIAE 189
                 456689***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-331891IPR002100Transcription factor, MADS-box
CDDcd002653.53E-451891No hitNo description
PRINTSPR004045.6E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.1E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-335475IPR002100Transcription factor, MADS-box
PfamPF014866.6E-25100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.792103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAFPNQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRA TIDRYKKASS DPSNSVSTSE ANTQFYQQEA AKLRRQIREI  120
QTSNRQILGE GVSSMSLKEL KNTEGKVEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN  180
MYLRAKIAEN ERAQQQMSLI NPAAAGASEY QPMSSQTYDV HNFLPVVNLL EPNHPYSRQD  240
QTPLQLVYDI HFMLFIIIIN YFVLVHQTCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2018100283Myocyte-specific enhancer factor 2B
1tqe_Q4e-2018100283Myocyte-specific enhancer factor 2B
1tqe_R4e-2018100283Myocyte-specific enhancer factor 2B
1tqe_S4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_A4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_B4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_C4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_D4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_E4e-2018100283Myocyte-specific enhancer factor 2B
6c9l_F4e-2018100283Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082936.11e-150floral homeotic protein AGAMOUS
SwissprotQ93XH41e-121MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2Z7C8D50.0A0A2Z7C8D5_9LAMI; Uncharacterized protein
STRINGXP_009762632.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]