PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV42264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23432.8 Da PI: 10.7631 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.9e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd ll+++++ +G g+W++++ + g++R++k+c++rw +yl KZV42264.1 11 RGAWSREEDVLLKKCIQIYGEGRWHLVPLRAGLNRCRKSCRLRWVNYL 58 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.6e-16 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E +ll +++k+lG++ W++Ia +++ gRt++++k++w++++ KZV42264.1 64 RGCFTADEVDLLRRLHKLLGNR-WSLIAGRIP-GRTANDVKNFWNTHM 109 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.623 | 6 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 7 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-27 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-10 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 62 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.052 | 63 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-11 | 67 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGSGNREGVK RGAWSREEDV LLKKCIQIYG EGRWHLVPLR AGLNRCRKSC RLRWVNYLSP 60 NIKRGCFTAD EVDLLRRLHK LLGNRWSLIA GRIPGRTAND VKNFWNTHMA KTSSSPKGSK 120 PVEKKEIIKP KPHNVAMSIN KPQQSSEWGS NVVDTRETNK ISGKSVFPTQ KGSFSGGGPT 180 ADNWPTQADG GNGLSEISLG FWKMLEFGDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-21 | 11 | 111 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-20 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-20 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-21 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 4e-21 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV42264.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023769216.1 | 8e-63 | transcription factor MYB90-like isoform X2 | ||||
Swissprot | Q9FNV9 | 1e-55 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2Z7C5R6 | 1e-153 | A0A2Z7C5R6_9LAMI; R2r3-myb transcription factor | ||||
STRING | Gorai.001G087200.1 | 3e-61 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 7e-57 | myb domain protein 113 |
Publications ? help Back to Top | |||
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