PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV42086.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 269aa    MW: 30668.6 Da    PI: 8.4792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV42086.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-142370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W  eEd ll+++++  G g+W+  a+  g++R++k+c++rw++yl
       KZV42086.1 23 RGPWILEEDNLLIQYINSNGEGRWNFLAKSAGLKRSGKSCRLRWLNYL 70
                     89********************************************97 PP

2Myb_DNA-binding54.43e-1776119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
       KZV42086.1  76 RGNLTPQEQLLILELHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1511870IPR017930Myb domain
SuperFamilySSF466898.98E-2921117IPR009057Homeodomain-like
SMARTSM007176.9E-122272IPR001005SANT/Myb domain
PfamPF002498.6E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-202477IPR009057Homeodomain-like
CDDcd001671.67E-82570No hitNo description
PROSITE profilePS5129425.80371125IPR017930Myb domain
SMARTSM007174.6E-1575123IPR001005SANT/Myb domain
PfamPF002494.6E-1676119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2478124IPR009057Homeodomain-like
CDDcd001674.82E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSNGRINKIV TKNSYEGEAE VRRGPWILEE DNLLIQYINS NGEGRWNFLA KSAGLKRSGK  60
SCRLRWLNYL KPDIRRGNLT PQEQLLILEL HSKLGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQARQLKV DSNSEKFLEA IRQLWMPRLK EKMEQNSSSA STSSCSSSVS TIETQMKTNA  180
PSPVFNNDIP LRSTRPDPSA DMGTNALMSL MSPEVLRLVC GNSLEEENCM DGQNISVSGC  240
HVAHFDWLGE DFGESFWSND ELWSFKSLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV42086.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076599.11e-103transcription factor MYB62
SwissprotQ9C9G71e-83MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2Z7C5A30.0A0A2Z7C5A3_9LAMI; Uncharacterized protein
STRINGSolyc05g009230.1.15e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-81myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]