PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV41738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ARF | ||||||||
Protein Properties | Length: 808aa MW: 90301.5 Da PI: 6.3421 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l KZV41738.1 115 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 209 99*****************************7444..44459************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ KZV41738.1 210 LLGIRRA 216 ****997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.1e-39 | 241 | 324 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+v+YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld +rWpnS+Wrs+k KZV41738.1 241 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDAIRWPNSHWRSVK 324 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.93E-49 | 99 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 108 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-21 | 114 | 215 | No hit | No description |
Pfam | PF02362 | 2.2E-21 | 115 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 115 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-34 | 241 | 324 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 8.5E-7 | 700 | 781 | No hit | No description |
Pfam | PF02309 | 3.4E-8 | 703 | 794 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.737 | 707 | 791 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MEGEKKCLNS ELWHACAGPL VSLPMVGSRV VYFPQGHSEQ VAATTNKEID AHIPNYPSLP 60 PQLICQLHNV TMHVDVETDE VYAQMTLQPL TPQEQKDTYL PVELGTPSRQ PTNYFCKTLT 120 ASDTSTHGGF SVPRRAAEKV FPPLDFSQTP PAQELIARDL HDVEWKFRHI FRGQPKRHLL 180 TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA 240 AAHAASTNSC FTVFYNPRAS PSEFVIPLSK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY 300 MGTITGIGDL DAIRWPNSHW RSVKVGWDES TAGDRQPRVS LWEIEPLTTF PMYPSLFPLR 360 LKRPWYPGAS SFQDSLAQIG NNEAINGMTW LRGEAGEQGF GSINFQSIGM FPWMQQRFDP 420 SASRNDLSHQ YQAMLASGLQ NFGGGDMLKH QMMQFQQPVH YLQHPGAHNP LSQQQQVVDL 480 SVSSSHMLSA QSQTLSDNMP RPLLQLVDNH SEEHLQQHTY QESFSIQHDQ LQQRQPSDVP 540 SPSFTKPSFS NPISNFSAPM AHSSMQNMLG SLCTEGTGDL LNFTRTDQQI LIEQSPQQSW 600 VAKFSQSPVG GRSNSASLPP YRGKEASGEH ETCNLDAQNH DLFGTNMDSS SLLLPTMVSG 660 IGTSSVHTDM SSMPLGGSGY QNHLYGYVQE SDVLHNAGHI SQPTQASTFV KVYKTGSVGR 720 SLDIAQFNSY QELRQELGQM FRIPGLLEDP QRSGWQLVFV DREDDVLLLG DDPWDAFVNN 780 VWYIKILSPE DMQKLGKQDP ESLSTNAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 4 | 345 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV41738.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097995.1 | 0.0 | auxin response factor 8 isoform X4 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2Z7CBQ8 | 0.0 | A0A2Z7CBQ8_9LAMI; Auxin response factor | ||||
STRING | XP_009789648.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |