PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV41670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 29094.4 Da PI: 5.1426 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 20 | 71 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ F ++ ++ +++ +LA+ lgL+ rqV +WFqNrRa++k KZV41670.1 20 RRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWK 71 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.8e-38 | 18 | 109 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq+k+LE+ F++e+kLe+++K++lar+Lglqprqva+WFqnrRAR+k++q+E++y++Lk++yd+l + ++L+ke+e+L+++l+e KZV41670.1 18 NDRRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWKARQIEQEYKVLKANYDNLYLHFDHLKKENESLQRQLQE 109 579**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-18 | 11 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.589 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-16 | 15 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.18E-14 | 17 | 74 | No hit | No description |
Pfam | PF00046 | 5.4E-17 | 20 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 20 | 80 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.1E-6 | 44 | 53 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.1E-6 | 53 | 69 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.7E-13 | 74 | 112 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEALDQKAKS QEKKRIKNDR RFSDEQIKSL ESIFDQETKL ESRKKMQLAR DLGLQPRQVA 60 IWFQNRRARW KARQIEQEYK VLKANYDNLY LHFDHLKKEN ESLQRQLQEL SGVEKNLDED 120 DLNDHRVGGG FQANIPNDEN ISKPFGKVED REELVCWDED EVEISHLASP QTWDNLCSDG 180 LFEQSLGITQ NCRPPIHPST VSLRPQSAVR VTLKRGKEKG LYGSSSVVVA DSTISKDQNF 240 DDVSDVEEMG TC |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV41670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075911.1 | 4e-58 | homeobox-leucine zipper protein ATHB-12-like isoform X2 | ||||
TrEMBL | A0A2Z7CAH9 | 0.0 | A0A2Z7CAH9_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-39 | homeobox 7 |