PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV41646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 428aa MW: 49139.5 Da PI: 5.6309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 152 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ + ++++Lk+H r H KZV41646.1 152 YICSVCGRKCATNMDLKKHFRQlH 175 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 100 | 142 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 11.448 | 152 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 152 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 175 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.39E-12 | 164 | 304 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 237 | 291 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MAIGISIKPI ILNPRFPFFT LESNSLKTLS NPNPQVVLLS SKPPRQWGPI KSCMADREID 60 MVKTKEGVYA ANDKKVVVLW DLDNKPPRGP PFEAAMALKG VAQKFGDVVD ISAYANRHAF 120 IHLPQWVVEE RRERRLMDVM ERKGMYTPSE TYICSVCGRK CATNMDLKKH FRQLHERERQ 180 KKLTRMRSLK GKKRQRYKER FIDGNEKYNA AARSLLTPKV GYGLAQELKR AGVFVKTVED 240 KPQAADWALK RQMLHSMSRG VDWIVLVSDD SDFSEMLRKA KEANLGTVVV GDRDRALGVY 300 ADVWVPWSRV ENREIQESDL QLKSRGWRDL DERSESFSFS QIDGGAHIDE RSLDERVQRM 360 DFDGFTISAF SEGEEDYELE EDWAEKRLYR VDNAVDQLTV GSSSPGDEDD EGDYLLDSED 420 EFGDDAYF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV41646.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069738.1 | 0.0 | uncharacterized protein LOC105155542 | ||||
TrEMBL | A0A2Z7C419 | 0.0 | A0A2Z7C419_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00545.1.p | 1e-180 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12268 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-157 | C2H2-like zinc finger protein |