PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41449.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 553aa    MW: 61822.4 Da    PI: 5.0835
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41449.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.71.8e-1231735531374
        GRAS   1 lvelLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                 l++lL++cAe v++ +++          +a+alL  l++++s +gdp+qRl ay++e+ +arl++s+s +yk+l+++e s   sse ++++ ++++++P
  KZV41449.1 173 LKQLLFSCAETVAETETAslsdrsvaisAAEALLDILEKRVSVSGDPLQRLGAYMLEGTRARLLSSGSIIYKKLKCEEPS---SSELMSYMAVLYQICP 268
                 5799********996655555666777799*************************************************9...999999999******* PP

        GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                 + kf++  aN +I ea+e+e+r+HiiDf+i qG QW+aL+q L+ Rp+ pp +RiTgv++++s   ++  le +g++Lak+A+++gvpfef+  +a + 
  KZV41449.1 269 YWKFAYTSANVTIKEAMENEDRIHIIDFQIAQGSQWMALIQDLSRRPGRPPYIRITGVDDSQSAhaRAGGLELVGQKLAKMAQSCGVPFEFHG-AAMSG 366
                 ************************************************************998888999************************.89999 PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                  +++l++L+++pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+++eqe+++n+++F++rf+e+l+yy+a+f+s++a   +++++ri  
  KZV41449.1 367 CEVHLQNLDIRPGEALAVNFPYILHHMPDESVSTANHRDRLLRLVKSLSPKVVTIIEQESNTNTATFFQRFCETLDYYMAMFESIDAAHTKDERQRIRA 465
                 9***************************************************************************************999******** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 E+ +++r++vn++aceg++r+erhe ++kWr rl++aGF++vpls+++++ +  +l++++ + yrv e +g+l+lgWk+r++ + SaWr
  KZV41449.1 466 EENCVARDVVNLLACEGSDRVERHELFGKWRLRLMMAGFSQVPLSSSVNDAVWEMLKEYSPN-YRVAEANGALFLGWKNRAMSTSSAWR 553
                 ************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.475147534IPR005202Transcription factor GRAS
PfamPF035146.3E-121173553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MQSTRDVKTP SSIDGFYHQP VHQIEPYYLS NYQVYNNDSN GSRSQGTDVS FQADTEKFFT  60
LESTPATTYA AMYNSPSAVS VSSNISPLSP QFSNSHFSDL HCSSENTYGS SFSGSSGVDD  120
ENKLMQALWV LRNELLGPES DFEDSGSFNG VPSQPSVFTR YDRILEMAPQ MDLKQLLFSC  180
AETVAETETA SLSDRSVAIS AAEALLDILE KRVSVSGDPL QRLGAYMLEG TRARLLSSGS  240
IIYKKLKCEE PSSSELMSYM AVLYQICPYW KFAYTSANVT IKEAMENEDR IHIIDFQIAQ  300
GSQWMALIQD LSRRPGRPPY IRITGVDDSQ SAHARAGGLE LVGQKLAKMA QSCGVPFEFH  360
GAAMSGCEVH LQNLDIRPGE ALAVNFPYIL HHMPDESVST ANHRDRLLRL VKSLSPKVVT  420
IIEQESNTNT ATFFQRFCET LDYYMAMFES IDAAHTKDER QRIRAEENCV ARDVVNLLAC  480
EGSDRVERHE LFGKWRLRLM MAGFSQVPLS SSVNDAVWEM LKEYSPNYRV AEANGALFLG  540
WKNRAMSTSS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5521755253378Protein SCARECROW
5b3h_A2e-5521755252377Protein SCARECROW
5b3h_D2e-5521755252377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41449.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095941.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2Z7C4K80.0A0A2Z7C4K8_9LAMI; Scarecrow-like protein 13-like
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13