PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV41188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 23013.2 Da PI: 9.7173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.1 | 7.5e-45 | 28 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p G+rF Pt+e+l+ +yL+kk++++++e +i +v+ yk++Pw+L + + ++ewyfF++r+ ky++g+r+nra+ +gyWkat d+++ + ++e+ KZV41188.1 28 PLGMRFAPTEEQLI-CYLRKKIKNEPFED-VCICSVNFYKYNPWELTdMYPTLAKDEWYFFTSRKLKYPNGSRPNRAAGDGYWKATVADQKIQE-RQEV 123 89************.9**********888.67**************8444444778*************************************9.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kktLvfy+g+ap+g+kt+W+mhey+l KZV41188.1 124 IGFKKTLVFYHGKAPNGKKTNWIMHEYTL 152 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-46 | 24 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.084 | 27 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 28 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MERNQQSPTP ANPNQEPGPN ENAVPKFPLG MRFAPTEEQL ICYLRKKIKN EPFEDVCICS 60 VNFYKYNPWE LTDMYPTLAK DEWYFFTSRK LKYPNGSRPN RAAGDGYWKA TVADQKIQER 120 QEVIGFKKTL VFYHGKAPNG KKTNWIMHEY TLRQRSTRND ANNNMQVNNY SNSVNLTIPN 180 QFLIFSLILG PKLHEKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-40 | 27 | 162 | 17 | 152 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-40 | 27 | 162 | 17 | 152 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-40 | 27 | 162 | 17 | 152 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-40 | 27 | 162 | 17 | 152 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swm_B | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swm_C | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swm_D | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swp_A | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swp_B | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swp_C | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
3swp_D | 3e-40 | 27 | 162 | 20 | 155 | NAC domain-containing protein 19 |
4dul_A | 2e-40 | 27 | 162 | 17 | 152 | NAC domain-containing protein 19 |
4dul_B | 2e-40 | 27 | 162 | 17 | 152 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. | |||||
UniProt | Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV41188.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. | |||||
UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157746.1 | 9e-46 | PREDICTED: NAC transcription factor 32-like | ||||
Swissprot | Q8H115 | 3e-43 | NA102_ARATH; NAC domain-containing protein 102 | ||||
Swissprot | Q9CAR0 | 2e-43 | NAC32_ARATH; NAC transcription factor 32 | ||||
TrEMBL | A0A2Z7CA29 | 1e-146 | A0A2Z7CA29_9LAMI; Uncharacterized protein | ||||
STRING | Solyc10g083450.1.1 | 4e-44 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-44 | NAC domain containing protein 32 |