PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV41165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23397 Da PI: 6.9254 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.9e-20 | 81 | 129 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIr p + r++lg+f tae+Aa+a+++a+ +++g KZV41165.1 81 YRGVRQRP-WGKWAAEIRNP-----HkaSRVWLGTFETAEGAARAYDEAAIRFRG 129 9*******.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.2E-39 | 80 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 80 | 139 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-33 | 80 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.974 | 80 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.01E-33 | 81 | 137 | No hit | No description |
Pfam | PF00847 | 7.3E-13 | 81 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVAALKNVLT GGGAGDTESS TSQSTTGTSS SSASFTAGGV SFSVSEDLET CRFCRIKGCL 60 GCHFFEEEKD KGAKKRKKKT YRGVRQRPWG KWAAEIRNPH KASRVWLGTF ETAEGAARAY 120 DEAAIRFRGP RAKLNFPFSD YTSSPNTESS IAATQQQHQE NVIEMPNSNH SPMDIEKQKN 180 LSEMVIGDEE FQEWMKMMDF SGDSSDSATA FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-24 | 79 | 138 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV41165.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088263.1 | 2e-69 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 2e-34 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2Z7C2M0 | 1e-157 | A0A2Z7C2M0_9LAMI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_62.11 | 2e-58 | (Carica papaya) | ||||
STRING | cassava4.1_014137m | 1e-58 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 6e-30 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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