PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40989.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 282aa MW: 32763.5 Da PI: 5.4199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40989.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.2e-40	7	113	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kk+++ k++l +vik+vd+yk+ePwdL++ ++ +ee+ +yfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k KZV40989.1 7 VPPGFRFHPTDEELVDYYLRKKISSVKFDL-DVIKDVDLYKIEPWDLQElcRIGTEEQdGYYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS-K 103 69**************************.99**********95455555555488********************************.8 PP NAM 97 gelvglkktL 106 ++l+g++ktL KZV40989.1 104 HNLIGMRKTL 113 99*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-42	5	125	IPR003441	NAC domain
PROSITE profile	PS51005	35.404	7	150	IPR003441	NAC domain
Pfam	PF02365	1.5E-18	8	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MNSFSNVPPG FRFHPTDEEL VDYYLRKKIS SVKFDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQDGYYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHNLIGMR KTLEEGWAVC 120 RVFKKRIAAT VRYEEEHDSV RWYNCDDQVS FMPYFGSPKL VSHPTHYTCK QEFEAQYNIP 180 DHDAAYLKLP YLESPKIQQS STMNNAHCSS SLDVAYGFQE ERLQESNNIR MDVTLYSDQE 240 VLEQVTDWRL LDKFVASQLS QDGANNSNEA SDQVSESASF PN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-33	6	113	14	118	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40989.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071383.1	1e-117	NAC domain-containing protein 7-like
Refseq	XP_020548384.1	1e-117	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	2e-95	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2Z7C3B2	0.0	A0A2Z7C3B2_9LAMI; NAC domain-containing protein 7-like
STRING	EOY24430	1e-111	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	9e-98	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]