PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40968.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 623aa    MW: 69399.9 Da    PI: 7.1119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40968.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.5e-18101147148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+l++++v ++G + W+++a++++ gR +kqc++rw+++l
       KZV40968.1 101 KGTWTKEEDDLIIELVGKYGVKKWSAVANCLP-GRIGKQCRERWHNHL 147
                      799*****************************.*************97 PP
2Myb_DNA-binding55.21.6e-17153195145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +lv++++ +G++ W+ I+r ++ gRt++ +k++w+
       KZV40968.1 153 KDPWTEEEEAILVCCHRVYGNK-WAEISRFLP-GRTDNAIKNHWN 195
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.0885195IPR017877Myb-like domain
SuperFamilySSF466894.95E-654101IPR009057Homeodomain-like
SMARTSM007175.95597IPR001005SANT/Myb domain
CDDcd001670.004835995No hitNo description
Gene3DG3DSA:1.10.10.605.0E-1374111IPR009057Homeodomain-like
PROSITE profilePS5129430.17596151IPR017930Myb domain
SuperFamilySSF466891.08E-3198194IPR009057Homeodomain-like
SMARTSM007171.2E-17100149IPR001005SANT/Myb domain
PfamPF002495.6E-17101147IPR001005SANT/Myb domain
CDDcd001672.05E-15103147No hitNo description
Gene3DG3DSA:1.10.10.601.0E-26112154IPR009057Homeodomain-like
SMARTSM007177.9E-17152200IPR001005SANT/Myb domain
PROSITE profilePS5129420.824152202IPR017930Myb domain
PfamPF002495.3E-15153195IPR001005SANT/Myb domain
CDDcd001676.63E-13155195No hitNo description
Gene3DG3DSA:1.10.10.608.6E-21155200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MFQVKDESCI LDSIKEVEIA SIPSNSESSC DTVTPRSSSD SSGRRSSCLT RRRFSPAGWT  60
TDEQKYLEAT YHGSLAECIS GRTDVQCLHR WQKVLNPDLV KGTWTKEEDD LIIELVGKYG  120
VKKWSAVANC LPGRIGKQCR ERWHNHLDPA IRKDPWTEEE EAILVCCHRV YGNKWAEISR  180
FLPGRTDNAI KNHWNCSVKK REDLNFCSVS ALELLETTSP KSGIHKEIPG SKSHARVAQS  240
LGKHGHYVQR KGDGNPDFCK DTSETIPNFQ GYCLSSEGFR NLTPLKCVEF DLLTNVKSDK  300
SGKPCTGSVN SVRQSWDSLS TNSLNSFMDL CHQTERCDAS LEVDHTNNSE RMFGPPKRRQ  360
SWDSLSTNSL NSVMDSCHQT EKCLAGLEVD HANKSERMFR LPKRPRCSPF VTDMRSEDSP  420
LDTILSLSIH GFGEVNQKVG KRNKACDRSQ LADHMEKDLG CQPSQVNDFV VSKSPGKSTC  480
LENRNEHGHS CLANLSLSIS SGTCCPECML MKSAITYEGT PSIIRKRTFK EIQYANCLSA  540
PGHIVSSISF SNDANGTELI TEKDCEQSMI SASGKLGLGQ ALERRLEYAF DLEWDSTTLG  600
RHVPDSTTPS SNHKSIADIG LPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-55592019158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-55592019158MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550693.11e-154uncharacterized protein LOC105164125
TrEMBLA0A2Z7C9F90.0A0A2Z7C9F9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-65myb domain protein 3r-5