PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40924.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 256aa    MW: 28471.6 Da    PI: 9.0224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40924.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+t Ed ll + +++ G g+W++ +++ g+ R++k+c++rw +yl
       KZV40924.1 14 RGPWSTKEDTLLTNFIQENGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.13.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w++yl
       KZV40924.1  67 RGNISQDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112
                      7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.848961IPR017930Myb domain
SuperFamilySSF466891.52E-2711108IPR009057Homeodomain-like
SMARTSM007179.8E-111363IPR001005SANT/Myb domain
PfamPF002492.7E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-201568IPR009057Homeodomain-like
CDDcd001679.24E-91661No hitNo description
PROSITE profilePS5129424.54962116IPR017930Myb domain
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2469116IPR009057Homeodomain-like
CDDcd001671.78E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRSPCCSKV GLRRGPWSTK EDTLLTNFIQ ENGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SQDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT YLLKKLNNAG  120
IHPKPHKDLP RPPRVKKAPA PAPPPIPDHP PKTKVYLPKA IRISPAFSRT DSLDSLLSGF  180
SSSDGAERAA DGCGRKPEAS FVPMTWPELG DYEVCAAGVG DDFLGGYCVL PLPESDTSST  240
DVFMLDQVYE DYLQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121175109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.11e-124transcription repressor MYB5-like
TrEMBLA0A2Z7C1Z90.0A0A2Z7C1Z9_9LAMI; Myb-related protein 330-like
STRINGXP_009792412.17e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-67myb domain protein 5