PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40588.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 329aa    MW: 36535.3 Da    PI: 8.3621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40588.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-181459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ +  gR++k+c++rw + 
       KZV40588.1 14 KGPWSPEEDDLLQLLVQKHGPRNWSLISKSIV-GRSGKSCRLRWCNQ 59
                     79******************************.***********985 PP
2Myb_DNA-binding53.55.4e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEd ++++a++++G++ W+tIar +  gRt++ +k++w++ 
       KZV40588.1  68 AFSPEEDRIIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.878964IPR017930Myb domain
SuperFamilySSF466892.91E-3111107IPR009057Homeodomain-like
SMARTSM007179.0E-161362IPR001005SANT/Myb domain
PfamPF002499.6E-181459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241567IPR009057Homeodomain-like
CDDcd001676.32E-151658No hitNo description
SMARTSM007174.5E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129421.74166115IPR017930Myb domain
CDDcd001671.85E-1268111No hitNo description
PfamPF002492.2E-1468110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2368114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATNVIKTDT DRIKGPWSPE EDDLLQLLVQ KHGPRNWSLI SKSIVGRSGK SCRLRWCNQL  60
SPQVEHRAFS PEEDRIIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCDEGDG  120
DSGFAEFEIH PPLKRSVSDG SGLPVYFSPG SPSGSDVSES SLPVVSGSNL FKPVARPGGV  180
SLEVGADPPT SLSLSIPGSD SSESTSHRVD LIEANQKQTS PPPMLSLASS PKPEAQVAVQ  240
MAQQDKVFSP FSAELMAVMK EMIKTEVRDY MMGLEQHQQQ LFHHQHQQHF IRQQIQQQVQ  300
QMGMCMQQAN ANERLRNPTI NRVGISRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-401311457158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-401311457158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-40131143104C-Myb DNA-Binding Domain
1msf_C5e-40131143104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40588.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099313.11e-115transcription factor MYB44-like
SwissprotO231601e-94MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2Z7C8G00.0A0A2Z7C8G0_9LAMI; Uncharacterized protein
STRINGVIT_07s0129g01050.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-80myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]