PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV40302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HB-other | ||||||||
Protein Properties | Length: 124aa MW: 14579.6 Da PI: 9.3225 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 4 | 54 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f+k+q+++L+++Fe++ ++++e++ eL +gL+ +q++ F Rak++ KZV40302.1 4 RFNKHQINALNAAFEESEHLTKEKKHELVGVTGLDVEQITSRFNRERAKKR 54 69***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.22 | 1 | 56 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0021 | 2 | 60 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-9 | 3 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.96E-5 | 4 | 57 | No hit | No description |
Pfam | PF00046 | 3.8E-7 | 4 | 54 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 4 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAKRFNKHQI NALNAAFEES EHLTKEKKHE LVGVTGLDVE QITSRFNRER AKKRTKQKMG 60 DLERKNDELQ EQLRLSEERE AALRKREAEL EAENRNLKQQ LGLMDQCNSP CDPFFMFVRG 120 LAKH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV40302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087134.2 | 6e-35 | homeobox-leucine zipper protein ATHB-20-like | ||||
TrEMBL | A0A2Z7C079 | 2e-84 | A0A2Z7C079_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15650 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 8e-06 | homeobox 3 |