PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40016.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 212aa    MW: 24818.1 Da    PI: 5.6454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40016.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-071445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+WT eEd++l + +   G  +W+++++  g
       KZV40016.1 14 RGPWTLEEDQKLMNFISNNGIQCWRLVSKQAG 45
                     89***************************988 PP
2Myb_DNA-binding254.3e-08781032146
                      TT.-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  21 gg.tWktIartmgkgRtlkqcksrwqk 46 
                       +  W++Ia++++  Rt++++k++w++
       KZV40016.1  78 ENvEWSKIAAHFP-CRTDNEIKNHWNT 103
                      5556*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-10543IPR009057Homeodomain-like
PROSITE profilePS5129410.3089109IPR017930Myb domain
SMARTSM007176.7E-813107IPR001005SANT/Myb domain
PfamPF002491.7E-51445IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-1314106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-1181110IPR009057Homeodomain-like
PfamPF002498.1E-681103IPR001005SANT/Myb domain
CDDcd001672.73E-482103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRQPCCEKI ELKRGPWTLE EDQKLMNFIS NNGIQCWRLV SKQAGMLCYL MYSNFVQPTS  60
CHQVRPSAQE VEMSVLGENV EWSKIAAHFP CRTDNEIKNH WNTRIKKKMK LLGLDPLTHK  120
RIEPAPDPGS KEIQHRWEDQ ETVSSSKDGQ MWQIKAEGAK VSCMGRDEEE SSFKNLMQNT  180
ESWGDWSMDP FQDWIDNPFL WDTFNHLEYS FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-13111094108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40016.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071180.14e-62protein ODORANT1
SwissprotQ9C7U74e-38MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2Z7C0F61e-158A0A2Z7C0F6_9LAMI; Uncharacterized protein
STRINGMigut.E00231.1.p6e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-45myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]