PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39955.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 283aa    MW: 30848.9 Da    PI: 6.3722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39955.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001289111123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs++  L  H++ H
  KZV39955.1  89 FTCNFCKREFSTSQALGGHQNAH 111
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.62E-786117No hitNo description
Gene3DG3DSA:3.30.160.601.8E-486115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.53189116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MENQEECNSD GSSISATTSQ DSPPKSSGSP DHKTEPKTTS RVVLDLRLAS SSHGELSSAK  60
VDASSNLELN LFTSADEGTR SEQPDSKTFT CNFCKREFST SQALGGHQNA HKQERAMAKH  120
HHAGAAELGA VGGGASPFGH SAYTHFPYSA LSQNPFYGRS LGVRADSMIH KHYPYNPWPS  180
YGSRLAQEKF SRAYLISPTA SSYDRLRMES FPAPQVDDTS GLLNLEKFGE TIDFGVLNTK  240
PLGVNADTRH TVCKEKREVK NPSFGFDEGE LTNDPELDLS LKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086308.14e-54zinc finger protein 3-like
TrEMBLA0A2Z7C6R30.0A0A2Z7C6R3_9LAMI; Zinc finger family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-18C2H2 family protein