PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39952.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 545aa    MW: 60296.1 Da    PI: 5.9763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39952.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
       KZV39952.1 39 KGPWTTAEDAILIDYVKKHGEGNWNSVQKHTGLSRCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding51.42.5e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++++G++ W++ a +++ gRt++++k++w++
       KZV39952.1  92 KGAFTPEEERLIIELHAKMGNK-WARMAVHLP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0183486IPR017930Myb domain
SMARTSM007177.1E-163888IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-3138133IPR009057Homeodomain-like
PfamPF002491.9E-163986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-254094IPR009057Homeodomain-like
CDDcd001672.92E-124186No hitNo description
PROSITE profilePS5129425.8287141IPR017930Myb domain
SMARTSM007177.7E-1791139IPR001005SANT/Myb domain
PfamPF002493.2E-1592135IPR001005SANT/Myb domain
CDDcd001672.23E-1294135No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2595140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGHSTGDERE NRALSCDSPL SNDGDNFLRG SDRGVILKKG PWTTAEDAIL IDYVKKHGEG  60
NWNSVQKHTG LSRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIIELHAKM GNKWARMAVH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPA EFFQQALPEN QQSRNSPGIF GLDEGCHDSL  180
PSHGYETPDV MFDSLNMLPY RAEFPDISAS GSLVTGFGSP QLYTFLPQTV GLHKLTQEHD  240
EQMDFGCSAV NGSYPFDMAR NDRCENKMSQ SYGLYLPSDP NHTKQLWPFG VSPDSHFTSN  300
DIFSASEPLE GAEKLELPSL QYQETNSGVW GLLPFDAAPE SLDSFIQSPL SGTHPSHCSS  360
PRSSGLLEAL LYEAKFRSKS ENQSFDKATS STVSQGAMTY CSSLKAHSTE IKGVDPTSPS  420
GNSTGSNFNR CSPVDPIGTA MEEKIRASRM KSEVVNQRCI VILDEDRKEN LNHLDCSPPD  480
AVLGSCWLEQ SGSTVKQRGS ITEAIFLGDD LGSELKNMSS RTSGWGLGSC TWNNMPSAYQ  540
MSDIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32371405107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.10.0transcription factor GAMYB
RefseqXP_011091870.10.0transcription factor GAMYB
RefseqXP_011091873.10.0transcription factor GAMYB
RefseqXP_020552724.10.0transcription factor GAMYB
TrEMBLA0A2Z7BZ700.0A0A2Z7BZ70_9LAMI; Transcription factor GAMYB-like
STRINGMigut.N01870.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-114myb domain protein 33