PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39702.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRF
Protein Properties Length: 545aa    MW: 58947.5 Da    PI: 8.9144
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39702.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.9e-25199243145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  KZV39702.1 199 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 243
                 79****************************************985 PP
2QLQ60.93.6e-21137172237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 +FT++Q+++L++Q+l+yK+++an+PvP++Ll++i+k
  KZV39702.1 137 PFTPSQWMELEHQALIYKHIVANVPVPSYLLVPIKK 172
                 9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-13136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-15137170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.563137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954199243IPR014977WRC domain
PfamPF088793.5E-21200242IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDFGVVSHKQ PASNTPGVGS TEPGNEKDNQ SLSMKHQRSG ISDDNWRLTK MTKPSEVDFS  60
SKNRTGESFA ALGRSNPCGL GVEDGQQMLS FSRNGGMSGD DASRSIAFSF FPDEPHSRTG  120
GGLNESMRAP FARMKAPFTP SQWMELEHQA LIYKHIVANV PVPSYLLVPI KKSLYAYGTL  180
ASNLLGWGPF HLDFSGSNDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP  240
VEGQTGHAVS GSTASNVAPI VSSSSASVIS SSSASNSFGV IPHQFNSLQP NLTIASVGNR  300
DNRTQGLQGL SLIPPSSINM KSKDTPFSIS KQYTPLEKSS YSEFGLVTSD SLVNPAEISY  360
MTAGNTDSFL KYANKEPNNQ HSAQHFVDNC PKTQSNSGSG PWPEELNSDW TQLSMSIPVA  420
PDFSSSSSSP AQEKSTISTI KMPQELNRVH MSLGLGHNLG DQMQKQTWGS SMCGPLGEVL  480
TSTTSYTEPG ANPSSLKAWV YNPKMDSSPT GVLQKSTFVT RSNSSSGSSP RSSDKKVIPA  540
PPVHE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099411.10.0growth-regulating factor 1
TrEMBLA0A2Z7BYI70.0A0A2Z7BYI7_9LAMI; Growth-regulating factor 1-like
STRINGXP_009589483.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-92growth-regulating factor 1