PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39621.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 296aa    MW: 33607.4 Da    PI: 6.7866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39621.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-101763347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +++ +av+++  +   +W+ +a++++ g+t  ++   +q +
       KZV39621.1 17 KWTPEENKRFENAVALFDRDtpdRWNNVAAMIP-GKTISDVMKQYQEL 63
                     7*****************99*************.********999975 PP
2Myb_DNA-binding45.81.4e-14118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Ia+ + ++Rt+ q+ s+ qky
       KZV39621.1 118 PWTEEEHRQFLLGLKKYGKGDWRNIANNFVTTRTPTQVASHAQKY 162
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-81466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-41663IPR009057Homeodomain-like
SuperFamilySSF466891.29E-111771IPR009057Homeodomain-like
CDDcd001671.95E-71764No hitNo description
PROSITE profilePS500906.6441764IPR017877Myb-like domain
PfamPF002496.3E-91763IPR001005SANT/Myb domain
PROSITE profilePS5129421.44111167IPR017930Myb domain
SuperFamilySSF466896.28E-17113166IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18114166IPR006447Myb domain, plants
SMARTSM007173.3E-13115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-13115162IPR009057Homeodomain-like
CDDcd001676.51E-11118163No hitNo description
PfamPF002491.5E-12118162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEPCDYNRFF EGNRVAKWTP EENKRFENAV ALFDRDTPDR WNNVAAMIPG KTISDVMKQY  60
QELVEDVSDI EAGLIPIPGY GNNSLALQWV NDHGHCSSVR KRNCSGRGSD HERKKGVPWT  120
EEEHRQFLLG LKKYGKGDWR NIANNFVTTR TPTQVASHAQ KYFIRQLLGT KDKKRSSIHD  180
ITTVNPTAEA KPPSPDHKHH HSPSCSLDKS TLIMKSEQDL HDPDMNAVTW RATTCDCYDY  240
RFNNPGTTMA FSPRNSSSST ISTSSYEGST PPVFGVNLLE CGTQHELWLE PDDMIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1718801173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.11e-114transcription factor DIVARICATA-like
SwissprotQ8S9H72e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2Z7BYF70.0A0A2Z7BYF7_9LAMI; Duplicated homeodomain-like superfamily protein
STRINGXP_010109645.12e-98(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-93MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]