PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39594.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 356aa    MW: 41283 Da    PI: 8.4918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39594.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00131942123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                y C++Cg   s ks+  +Hi++ H
  KZV39594.1 19 YYCQYCGIFRSKKSLISSHIKSqH 42
                89*******************988 PP
2zf-C2H219.33e-066282323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C  Cg sF  + +Lk+H+++H
  KZV39594.1 62 CDECGASFIKPAHLKQHMQSH 82
                *******************99 PP
3zf-C2H217.51.1e-0588112123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dC+ s++rk++L+rH+  H
  KZV39594.1  88 FTCPmdDCHSSYRRKDHLTRHLLQH 112
                 89*******************9887 PP
4zf-C2H215.55e-05117142123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 ++Cp   C+ +F+ +sn+krH +  H
  KZV39594.1 117 FECPveGCKVRFTVQSNMKRHVKEfH 142
                 89********************9988 PP
5zf-C2H218.94.1e-06158182123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y Cp   Cgk+F+ +  L++H ++H
  KZV39594.1 158 YACPepGCGKVFKYPCKLRKHENSH 182
                 88********************999 PP
6zf-C2H217.51.2e-05248272223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C+  Fs++snL++Hi+  H
  KZV39594.1 248 KCSfsGCTSAFSTRSNLNQHIKAvH 272
                 799999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6421947IPR007087Zinc finger, C2H2
SMARTSM00355231942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-65979IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00986082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1546087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576671.85E-1068122No hitNo description
Gene3DG3DSA:3.30.160.606.3E-1180114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6488117IPR007087Zinc finger, C2H2
SMARTSM003550.0188112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-8115143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.38E-7115143No hitNo description
SMARTSM003550.0058117142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245117147IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SuperFamilySSF576676.48E-5149183No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6155182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.5E-4158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003551.4190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4192213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035536218239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-8229269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-8230285No hitNo description
SMARTSM003550.0014247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905247277IPR007087Zinc finger, C2H2
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM0035521278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGNEGDSGRG PIFRDIRRYY CQYCGIFRSK KSLISSHIKS QHPEETAERN EGKGDGKKLN  60
ICDECGASFI KPAHLKQHMQ SHSVERSFTC PMDDCHSSYR RKDHLTRHLL QHQGKLFECP  120
VEGCKVRFTV QSNMKRHVKE FHDDSDYHSA EFEHPKEYAC PEPGCGKVFK YPCKLRKHEN  180
SHVRLDTVEA LCSEPGCMKY FSNEQCLKEH LRSCHQYVLC DECGTKQLKK NIKRHLRMHE  240
GVCTEQIKCS FSGCTSAFST RSNLNQHIKA VHMELKPFTC SIPGCHMKFA FKHVRDNHEI  300
SGCHVYIPGN FEESDEQFRS RPRGGRKRKY PILESLLRKR VFPPNIEEIT MNGDPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-176425819179PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-176425819179PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ41e-108TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z7BYW30.0A0A2Z7BYW3_9LAMI; Zinc finger protein 16-like
STRINGMigut.K00168.1.p1e-179(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-104transcription factor IIIA