PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV39554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 177aa MW: 19994 Da PI: 10.1975 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 2 | 39 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ll+++ + +G g+W++++ + g++R++k+c++rw +yl KZV39554.1 2 LLKKCMATYGEGRWHLVPLRAGLNRCRKSCRLRWVNYL 39 6889999*****************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.7e-16 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E +l ++++k+lG++ W++Ia +++ gRt++++k++w+++ KZV39554.1 45 RGCFTADEIDLMIRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTH 89 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.67 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.615 | 1 | 39 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.3E-8 | 2 | 39 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.64E-21 | 2 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 2 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-5 | 2 | 39 | No hit | No description |
PROSITE profile | PS51294 | 21.738 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 45 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 47 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-11 | 48 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MLLKKCMATY GEGRWHLVPL RAGLNRCRKS CRLRWVNYLS PDIKRGCFTA DEIDLMIRLH 60 KLLGNRWSLI AGRIPGRTAN DVKNYWNTHV SKASSSMKSS QTKIVKPKPH NLAKSAASNL 120 QPHQASIGEE TPQHIHQTTP HSIQMGPNTG SDHLSHGDGL VREMSTCFWE LLEFDVV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 5 | 96 | 20 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV39554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023769216.1 | 1e-57 | transcription factor MYB90-like isoform X2 | ||||
Swissprot | Q9FNV9 | 6e-50 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2Z7BYS8 | 1e-130 | A0A2Z7BYS8_9LAMI; Uncharacterized protein | ||||
STRING | Gorai.001G087200.1 | 5e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-50 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|