PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV39449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25072.7 Da PI: 8.1317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.6 | 1.6e-41 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e++r d+++slvyeA++r+rdPvyG++g i++lqqq+e l+ael+++k+ KZV39449.1 49 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAENQRADTANSLVYEANVRLRDPVYGCMGAISALQQQVEALQAELNAVKA 147 7***********************************************************************************************998 PP DUF260 100 e 100 e KZV39449.1 148 E 148 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.265 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-41 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MFCEEFFGRE RFEEIAKKIK RETNVIAPSR GGRRHMLGPP AGTLDTVTPC AACKLLRRRC 60 AQECPFSPYF SPHEPQKFAS VHKVFGASNV SKMLMEVAEN QRADTANSLV YEANVRLRDP 120 VYGCMGAISA LQQQVEALQA ELNAVKAEIL KFKYRETNNS INLPSPHHIV ATHSSGTISI 180 AAPPPPPEPP LPSPPPSLPI TPSMYNTVVI TSSASDFSTL TDGNITYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 49 | 159 | 11 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 49 | 159 | 11 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV39449.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022764403.1 | 2e-98 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 3e-78 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2Z7BY89 | 1e-168 | A0A2Z7BY89_9LAMI; LOB domain-containing protein 15 | ||||
STRING | cassava4.1_031813m | 8e-97 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-70 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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