PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39159.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 316aa    MW: 33898 Da    PI: 7.1337
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39159.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.8e-17229265135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  KZV39159.1 229 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKGV 265
                 *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.58795130IPR010399Tify domain
SMARTSM009792.0E-1095130IPR010399Tify domain
PfamPF062001.1E-1299129IPR010399Tify domain
PROSITE profilePS5101713.066162204IPR010402CCT domain
PfamPF062037.3E-16162204IPR010402CCT domain
SMARTSM004012.9E-11223276IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.906223271IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12224274No hitNo description
Gene3DG3DSA:3.30.50.104.1E-15228270IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
CDDcd002025.87E-15229271No hitNo description
PfamPF003201.6E-14229265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYGQPHFSMN GANVQHLQHH GTTRVGKDEK EDAVQCSNVD SIDKNPASQI GYDGPHSPHA  60
LHDSGGGGVM DGVEVVGPHA LYESALVPVA ASAGGDVGAD QLTLSFQGEV YVFDSVTPEK  120
VQAVLLLLGG YEVPTGIPTP GMTPPNHRGL AEQTGRSSQP QRVASLNRFR EKRKERCFDK  180
KIRYTVRKEV ALRMQRKKGQ FTSSKSVSEE PGSSTADFDG GQEEQETLCR HCGISSKSTP  240
MMRRGPDGPR TLCNACGLKW ANKGVLRDLS KVPIVAVQPH FMDAVEISNG ETHGADTIIP  300
SANAITSTAE KTVLNA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087961.11e-138GATA transcription factor 24-like isoform X1
SwissprotQ8GXL73e-81GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2Z7BXF50.0A0A2Z7BXF5_9LAMI; GATA transcription factor 24-like
STRINGMigut.B00543.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]