PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39069.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 299aa    MW: 32362.4 Da    PI: 6.8428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39069.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.71.1e-21124173255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIr p   + + +rf+lg+f+tae+Aa+a+++a+++++g
  KZV39069.1 124 KYRGVRQRP-WGKWAAEIRNP---N-KaARFWLGTFDTAEDAAQAYDEAALRFRG 173
                 8********.**********9...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-32123182IPR001471AP2/ERF domain
PfamPF008478.4E-16124173IPR001471AP2/ERF domain
CDDcd000184.25E-35124183No hitNo description
SuperFamilySSF541712.55E-22124182IPR016177DNA-binding domain
PROSITE profilePS5103225.093124181IPR001471AP2/ERF domain
SMARTSM003808.5E-37124187IPR001471AP2/ERF domain
PRINTSPR003673.4E-11125136IPR001471AP2/ERF domain
PRINTSPR003673.4E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPMASRVNKK QEMSVMVSAL AHVIAGDHEN ETAVETGGGG SSGGAPTSSA CKRRRADESS  60
SNCSRHHNDF PVQSSNTSAL SETTSPSIPK SSSTVITAAT YEYKHHQHKM SANEYSLSRS  120
ATRKYRGVRQ RPWGKWAAEI RNPNKAARFW LGTFDTAEDA AQAYDEAALR FRGSRAKLNF  180
PENVRLKEQP IQSELNLTSN QILAGSIFSE PIFNRQSQFE GSSSSGLMVL DDTQGHDSMG  240
SSSGYSSELG HCPVLYTPSL DVEHGTGSSR CSGGGDGADF SFCQEYCSCN QVDDKTFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25123184163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7BX710.0A0A2Z7BX71_9LAMI; DNA binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-27ethylene response factor 110